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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_87725791_87731682_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
87725791 - 87731682
Intron Length:
5892

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGCAGC
5'SS Class:
strong_major
3'SS Sequence:
CTTACATTTCCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTACAT
U12 Branch Point Sequence:
TGCTCCTTACAT
Flanking Amino Acid:
GTQPQTGQVEAGYSQQQTPS
Intron Amino Acid Position:
242

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.8
0.82
0.9
72.2
39.5
Major BPS
70.4
0.51
1.1
78.7
33.6
Major PPT
79.2
0.66
0.9
69.7
40.4
Minor 5ss
34.3
-1.8
2.9
43
44.2
Minor BPS
63.1
0.49
1.8
77.97
44

Associated Gene:

Gene:
TFG
Ensembl Gene ID:
ENSAPLG00000012259
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034116
87714431 - 87732056
17626