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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_87743869_87747717_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
87743869 - 87747717
Intron Length:
3849

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAAGCAGA
5'SS Class:
major
3'SS Sequence:
TTTGTCCCTTTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTTTTTATAACT
Flanking Amino Acid:
DIHQASRKKLAKNETHVWPA
Intron Amino Acid Position:
306

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.9
0.71
1
68.9
43.8
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
80.8
0.69
0.7
78.7
30.2
Minor 5ss
38.3
-1.3
2.8
40.4
45.5
Minor BPS
74.1
0.84
1.5
92.32
29.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000013913
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014500
87743684 - 87804642
60959