About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_87747814_87748292_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
87747814 - 87748292
Intron Length:
479

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTGAGGAGA
5'SS Class:
strong_major
3'SS Sequence:
CCTTTTTGTGTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTAAC
U12 Branch Point Sequence:
CTGGAATTAACA
Flanking Amino Acid:
DSSSLPGAILVHLIVPGLNE
Intron Amino Acid Position:
274

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.7
0.84
0.9
74.8
37
Major BPS
73.1
0.57
0.9
73.7
27.1
Major PPT
79.2
0.66
0.8
76.3
32.3
Minor 5ss
26.2
-2.7
2.9
30.9
42.7
Minor BPS
49.1
-0
1.9
61.23
44.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000013913
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014500
87743684 - 87804642
60959