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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_87748356_87749480_R

Intron Information:

Intron Rank:
7
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
87748356 - 87749480
Intron Length:
1125

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAACCTTC
5'SS Class:
weak_major
3'SS Sequence:
TTTGTCTCCACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAA
U12 Branch Point Sequence:
ATCTTCTGATCT
Flanking Amino Acid:
KLVPVTIIKQVIQNRTQPKT
Intron Amino Acid Position:
253

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.4
0.65
1.2
73.2
39.3
Major BPS
90.8
1.01
0.7
91.9
19.6
Major PPT
82
0.72
0.8
76.7
32.1
Minor 5ss
63.9
0.47
2.4
76.5
39.2
Minor BPS
56.7
0.29
1.7
74.74
42.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000013913
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014500
87743684 - 87804642
60959