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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_87749533_87754300_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
87749533 - 87754300
Intron Length:
4768

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGCAAA
5'SS Class:
strong_major
3'SS Sequence:
TCCCTTCTTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CAGTTAT
U12 Branch Point Sequence:
TATCCCAAGACT
Flanking Amino Acid:
YKLVPNTQTQLTLRDNKKLV
Intron Amino Acid Position:
236

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83
0.78
0.9
75.9
35.2
Major BPS
61.2
0.28
1.2
53
42.8
Major PPT
85.8
0.81
0.7
83.8
24.3
Minor 5ss
44.8
-0.6
2.6
56.7
47.6
Minor BPS
50.4
0.09
2
75.07
41.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000013913
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014500
87743684 - 87804642
60959