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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_87757470_87766876_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
87757470 - 87766876
Intron Length:
9407

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAATAA
5'SS Class:
strong_major
3'SS Sequence:
TTTTATTGAGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTTTTTTTTATT
Flanking Amino Acid:
WTATSNCASDRFYTVRYREK
Intron Amino Acid Position:
154

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.7
0.77
0.9
76.3
28.1
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
76.6
0.6
1
74.3
39.9
Minor 5ss
36.6
-1.5
3.1
46.9
48.4
Minor BPS
69.2
0.69
1.5
86.8
32.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000013913
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014500
87743684 - 87804642
60959