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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_87767010_87769871_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
87767010 - 87769871
Intron Length:
2862

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATTTTAC
5'SS Class:
major
3'SS Sequence:
TGCATGTTTCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGTAAT
U12 Branch Point Sequence:
TAACTTGTAATT
Flanking Amino Acid:
RVSNNKKSCSGRTKTQKPLQ
Intron Amino Acid Position:
110

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.2
0.66
1
73
32.2
Major BPS
84.4
0.85
1.1
84
34.5
Major PPT
70.5
0.46
1
61.5
44.4
Minor 5ss
46.6
-0.3
2.5
61.2
43.7
Minor BPS
48.6
-0
1.9
66.67
38.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000013913
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014500
87743684 - 87804642
60959