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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_87769941_87780638_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
87769941 - 87780638
Intron Length:
10698

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGGCTT
5'SS Class:
strong_major
3'SS Sequence:
TCTTCATTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTCAT
U12 Branch Point Sequence:
TGTTTCTTCATT
Flanking Amino Acid:
SEGNTYITELDAEPRYLVSV
Intron Amino Acid Position:
87

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.1
0.78
0.9
75.2
40.6
Major BPS
87.1
0.92
0.7
85.9
22.5
Major PPT
86.2
0.81
0.7
80.3
30.6
Minor 5ss
36.8
-1.5
3.5
53.4
44.8
Minor BPS
67.5
0.63
1.7
83.97
37.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000013913
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014500
87743684 - 87804642
60959