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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_87780819_87804563_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
87780819 - 87804563
Intron Length:
23745

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
GAG|GCAAGTAGC
5'SS Class:
strong_major
3'SS Sequence:
ACTCTTTTCCTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTGAT
U12 Branch Point Sequence:
TTATTTTTACTC
Flanking Amino Acid:
NLGNAQKLPRVKRQSLKVQI
Intron Amino Acid Position:
27

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
99.2
1.16
0.7
90.3
25.3
Major BPS
96.4
1.15
0.6
85.7
34.9
Major PPT
76.1
0.59
0.8
69.2
36.3
Minor 5ss
25.8
-2.8
3.6
36.7
40.4
Minor BPS
61.1
0.33
1.5
70
36.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000013913
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014500
87743684 - 87804642
60959