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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_8781483_8783963_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
8781483 - 8783963
Intron Length:
2481

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCG|GTAAGATCC
5'SS Class:
strong_major
3'SS Sequence:
TCTTTTTATGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTTCTTTTTATG
Flanking Amino Acid:
IYTRVGRVCANDMGGQRMLV
Intron Amino Acid Position:
276

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.6
0.75
1
69.9
35.6
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
88
0.85
0.8
84.7
28.9
Minor 5ss
39.7
-1.2
3
53.1
43.6
Minor BPS
54.3
-0
1.7
63.82
38.4

Associated Gene:

Gene:
SEMA3E
Ensembl Gene ID:
ENSAPLG00000013554
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043687
8659024 - 8806419
147396
ENSAPLT00000019752
8659024 - 8806419
147396
ENSAPLT00000014165
8659024 - 8806419
147396