About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_87909567_87910349_R

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
87909567 - 87910349
Intron Length:
783

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGTGAC
5'SS Class:
strong_major
3'SS Sequence:
CCTTGTATTCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTTAT
U12 Branch Point Sequence:
TGTACCTAAATT
Flanking Amino Acid:
IYENSELTKEEIQDRIRIIE
Intron Amino Acid Position:
1373

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
95.8
1.08
0.7
84.9
25
Major BPS
79.9
0.74
0.9
69.7
37.1
Major PPT
74.5
0.55
0.9
66
39.6
Minor 5ss
33
-1.9
3.2
42.9
44.7
Minor BPS
66
0.58
1.7
81.54
40.1

Associated Gene:

Gene:
IMPG2
Ensembl Gene ID:
ENSAPLG00000013567
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014122
87908611 - 88050175
141565