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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_87912877_87914046_R

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
87912877 - 87914046
Intron Length:
1170

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGGATG
5'SS Class:
strong_major
3'SS Sequence:
TGTGTGTTCTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTAAC
U12 Branch Point Sequence:
CGACTATTAACG
Flanking Amino Acid:
IDKYSLDVESGEQADPCKFQ
Intron Amino Acid Position:
1173

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.2
0.97
0.8
82.5
37
Major BPS
81.9
0.79
0.8
81.9
25
Major PPT
76
0.58
1
72.8
42.2
Minor 5ss
35.9
-1.6
3.3
47.8
47.9
Minor BPS
49.1
-0.2
1.7
51.56
42.3

Associated Gene:

Gene:
IMPG2
Ensembl Gene ID:
ENSAPLG00000013567
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014122
87908611 - 88050175
141565