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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_8791465_8792703_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
8791465 - 8792703
Intron Length:
1239

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAGTAA
5'SS Class:
strong_major
3'SS Sequence:
TTTTTATTCCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
ATTTTTTTATTT
Flanking Amino Acid:
GQYDVLFIGTDNGIVLKVIT
Intron Amino Acid Position:
460

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.4
0.74
1
74.3
31.9
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
88.1
0.86
0.7
81.4
35.2
Minor 5ss
35.4
-1.7
3.3
46.2
49.1
Minor BPS
66
0.58
1.5
81.3
34.9

Associated Gene:

Gene:
SEMA3E
Ensembl Gene ID:
ENSAPLG00000013554
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043687
8659024 - 8806419
147396
ENSAPLT00000019752
8659024 - 8806419
147396
ENSAPLT00000014165
8659024 - 8806419
147396