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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_87922677_87926452_R

Intron Information:

Intron Rank:
7
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
87922677 - 87926452
Intron Length:
3776

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAAAGA
5'SS Class:
strong_major
3'SS Sequence:
TGCAAAACCCCAG|T
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
CTCTCAT
U12 Branch Point Sequence:
CTTTGCAAAACC
Flanking Amino Acid:
GYKNIRVLEFSGVEVHYAVT
Intron Amino Acid Position:
294

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.9
0.75
0.9
74.1
36.4
Major BPS
82.6
0.81
0.9
83.3
27.7
Major PPT
56.1
0.14
1
44.5
41.1
Minor 5ss
32.2
-2
3
40.7
45.1
Minor BPS
47.5
-0.2
2.3
66.99
44.8

Associated Gene:

Gene:
IMPG2
Ensembl Gene ID:
ENSAPLG00000013567
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014122
87908611 - 88050175
141565