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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_87929568_87932277_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
87929568 - 87932277
Intron Length:
2710

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACT|GTGAGTGCT
5'SS Class:
major
3'SS Sequence:
ACTTTTCTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ACTAAAT
U12 Branch Point Sequence:
CCTTCTCTACTT
Flanking Amino Acid:
IPETEDADTTINNEIKKEDE
Intron Amino Acid Position:
221

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71
0.5
1.1
68.2
36.6
Major BPS
61
0.27
1.1
67.3
35.2
Major PPT
85.7
0.8
0.8
77.4
36.3
Minor 5ss
32.8
-2
3.3
51.5
44.9
Minor BPS
48.7
-0
1.9
67.5
44.3

Associated Gene:

Gene:
IMPG2
Ensembl Gene ID:
ENSAPLG00000013567
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014122
87908611 - 88050175
141565