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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_8797595_8803235_F

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
8797595 - 8803235
Intron Length:
5641

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGAACT
5'SS Class:
strong_major
3'SS Sequence:
TTTTCCCCTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTCAA
U12 Branch Point Sequence:
ATTTTCTCAAAC
Flanking Amino Acid:
RYYPTGMQAKRRFRRQDVRH
Intron Amino Acid Position:
560

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.8
0.92
0.8
83.3
27.9
Major BPS
85.7
0.89
0.8
85.9
22.5
Major PPT
86.6
0.82
0.7
78.3
30.6
Minor 5ss
30.7
-2.2
2.9
41.1
44.9
Minor BPS
63.8
0.41
1.6
74.33
35.7

Associated Gene:

Gene:
SEMA3E
Ensembl Gene ID:
ENSAPLG00000013554
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043687
8659024 - 8806419
147396
ENSAPLT00000019752
8659024 - 8806419
147396
ENSAPLT00000014165
8659024 - 8806419
147396