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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_8803304_8803888_F

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
8803304 - 8803888
Intron Length:
585

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAATCTAC
5'SS Class:
major
3'SS Sequence:
ATTTTCACACCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
ACATTTTTAAAA
Flanking Amino Acid:
AQQCFGQQFIGEVLEKTEER
Intron Amino Acid Position:
583

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.7
0.51
1.1
63.9
37
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
72.6
0.51
1
65.2
40.5
Minor 5ss
44.4
-0.6
2.9
55.8
43.2
Minor BPS
60.4
0.32
1.3
63.16
37

Associated Gene:

Gene:
SEMA3E
Ensembl Gene ID:
ENSAPLG00000013554
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019752
8659024 - 8806419
147396
ENSAPLT00000014165
8659024 - 8806419
147396
ENSAPLT00000043687
8659024 - 8806419
147396