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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_88037599_88048558_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
88037599 - 88048558
Intron Length:
10960

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGTGAG
5'SS Class:
strong_major
3'SS Sequence:
CTTGTGCCTTCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTAAC
U12 Branch Point Sequence:
GTTGTACTAACA
Flanking Amino Acid:
ANHLKYFRLRVCQETVWEVF
Intron Amino Acid Position:
111

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
94.8
1.06
0.7
81.4
32.7
Major BPS
76.8
0.67
0.9
75.9
25
Major PPT
77.7
0.62
0.9
73.6
37
Minor 5ss
32
-2.1
3.1
39.6
46.4
Minor BPS
48.4
-0.1
2
65.77
40.3

Associated Gene:

Gene:
IMPG2
Ensembl Gene ID:
ENSAPLG00000013567
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014122
87908611 - 88050175
141565