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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_88063604_88064892_R

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
88063604 - 88064892
Intron Length:
1289

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTC|GTAAGTTAA
5'SS Class:
major
3'SS Sequence:
TTGGTTTCCGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGTCAT
U12 Branch Point Sequence:
TGAACAGTAATT
Flanking Amino Acid:
EKNSEGDPKVSAAQRRHKRV
Intron Amino Acid Position:
812

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.5
0.53
1.3
72.9
34.4
Major BPS
84.8
0.86
1.1
85.7
34.9
Major PPT
78
0.63
0.9
73.2
37.2
Minor 5ss
41
-1
2.8
49.7
41.3
Minor BPS
46.8
-0.1
2.2
67.88
42.6

Associated Gene:

Gene:
SENP7
Ensembl Gene ID:
ENSAPLG00000002660
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002709
88056736 - 88092560
35825