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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_88065013_88066539_R

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
88065013 - 88066539
Intron Length:
1527

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAA|GTAAGTAAT
5'SS Class:
strong_major
3'SS Sequence:
TTTTCTTTGGTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATATAAC
U12 Branch Point Sequence:
AATATAACAATT
Flanking Amino Acid:
LNDVIIDFYLKYLLLEKAPK
Intron Amino Acid Position:
772

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.6
0.91
0.8
89.8
22.2
Major BPS
69.1
0.48
1
70
32.1
Major PPT
81.9
0.72
0.9
81.1
30.9
Minor 5ss
39.1
-1.2
2.8
51.7
39.1
Minor BPS
41.9
-0.5
1.9
59
37.5

Associated Gene:

Gene:
SENP7
Ensembl Gene ID:
ENSAPLG00000002660
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002709
88056736 - 88092560
35825