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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_88068994_88070500_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
88068994 - 88070500
Intron Length:
1507

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAT|GTGAGTAAT
5'SS Class:
strong_major
3'SS Sequence:
CTCGTTTTTCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAATAAT
U12 Branch Point Sequence:
TAATTGTTAATA
Flanking Amino Acid:
QLGKRVISKPSKSSEFVFLE
Intron Amino Acid Position:
603

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.6
0.77
0.9
85.1
25.6
Major BPS
80
0.75
1
78.6
31
Major PPT
83.8
0.76
0.8
75.9
38
Minor 5ss
34.4
-1.8
2.9
46.9
41.8
Minor BPS
57.5
0.23
2
68.8
37.7

Associated Gene:

Gene:
SENP7
Ensembl Gene ID:
ENSAPLG00000002660
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002709
88056736 - 88092560
35825