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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_88070669_88071441_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
88070669 - 88071441
Intron Length:
773

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGAAAA
5'SS Class:
strong_major
3'SS Sequence:
TTATTTTCTACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTAAAT
U12 Branch Point Sequence:
GTTAATTTAAAT
Flanking Amino Acid:
MTKYITIPFQVALNKNTKLT
Intron Amino Acid Position:
547

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.9
1.01
0.7
86
23.7
Major BPS
82.3
0.8
0.9
87.6
25.7
Major PPT
89
0.88
0.7
84.4
30.3
Minor 5ss
32.8
-2
2.9
39.7
45.8
Minor BPS
58.8
0.35
1.7
76.19
39.7

Associated Gene:

Gene:
SENP7
Ensembl Gene ID:
ENSAPLG00000002660
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002709
88056736 - 88092560
35825