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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_88072754_88073488_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
88072754 - 88073488
Intron Length:
735

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGTCCAG
5'SS Class:
major
3'SS Sequence:
TTTTTTTTTCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
CCTCATTTAATG
Flanking Amino Acid:
EDNVESCTEQLLTESDEVNC
Intron Amino Acid Position:
487

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
66.7
0.39
1.2
52.6
46
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
98.2
1.08
0.5
92.3
26.6
Minor 5ss
35.9
-1.6
3.3
46.8
48.6
Minor BPS
51.1
-0.1
1.6
53.07
42.4

Associated Gene:

Gene:
SENP7
Ensembl Gene ID:
ENSAPLG00000002660
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002709
88056736 - 88092560
35825