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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_88073668_88074205_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
88073668 - 88074205
Intron Length:
538

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTATGTACT
5'SS Class:
major
3'SS Sequence:
TTCCCCTCTTTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTTAT
U12 Branch Point Sequence:
GTATACATATCT
Flanking Amino Acid:
GDRPVVSVDPIVLSSDDEDG
Intron Amino Acid Position:
427

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.7
0.7
1
79.9
32.8
Major BPS
82.6
0.81
0.8
71.7
36
Major PPT
79.2
0.66
0.7
77.5
24.5
Minor 5ss
46.2
-0.4
2.5
61.3
37
Minor BPS
48.8
-0
2
72.27
43.6

Associated Gene:

Gene:
SENP7
Ensembl Gene ID:
ENSAPLG00000002660
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002709
88056736 - 88092560
35825