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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_88074564_88075174_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
88074564 - 88075174
Intron Length:
611

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCT|GTAAGTTGC
5'SS Class:
major
3'SS Sequence:
CCATATTTTCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATACAA
U12 Branch Point Sequence:
TGATCCATATTT
Flanking Amino Acid:
HIPEKSLLQPKEQRLSSTPP
Intron Amino Acid Position:
308

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.8
0.56
1.1
66.5
40.1
Major BPS
65.8
0.39
1
73.3
31.3
Major PPT
73.5
0.53
0.9
65.3
40.6
Minor 5ss
43.5
-0.7
2.8
62.6
42
Minor BPS
55.1
0.24
1.9
74.92
41.6

Associated Gene:

Gene:
SENP7
Ensembl Gene ID:
ENSAPLG00000002660
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002709
88056736 - 88092560
35825