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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_88076260_88080223_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
88076260 - 88080223
Intron Length:
3964

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGTTAC
5'SS Class:
strong_major
3'SS Sequence:
ATGTTCTTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTAAA
U12 Branch Point Sequence:
TGTTCTTTACAG
Flanking Amino Acid:
SPHESSFLSERPEYCSRVTD
Intron Amino Acid Position:
212

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.5
0.91
0.8
80.1
28.4
Major BPS
73.8
0.59
0.9
74
26.8
Major PPT
83
0.74
0.9
76.8
36.8
Minor 5ss
46.6
-0.3
2.5
60.6
44.5
Minor BPS
57.8
0.11
1.8
65.2
42.6

Associated Gene:

Gene:
SENP7
Ensembl Gene ID:
ENSAPLG00000002660
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002709
88056736 - 88092560
35825