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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_88080422_88081972_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
88080422 - 88081972
Intron Length:
1551

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACGTTGT
5'SS Class:
strong_major
3'SS Sequence:
ATATATATGGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TTATGATTTACT
Flanking Amino Acid:
PTLQSLFLSKRQPQVILTNV
Intron Amino Acid Position:
146

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.8
0.87
0.9
79
37.9
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
64.5
0.33
1.1
59.6
44.9
Minor 5ss
40.8
-1
3.1
58.8
45.7
Minor BPS
49.9
0.07
2.3
78.32
43.4

Associated Gene:

Gene:
SENP7
Ensembl Gene ID:
ENSAPLG00000002660
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002709
88056736 - 88092560
35825