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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_88087768_88089987_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
88087768 - 88089987
Intron Length:
2220

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAAGAGA
5'SS Class:
strong_major
3'SS Sequence:
TGTTTTATTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATAAC
U12 Branch Point Sequence:
TTTGTTTTATTT
Flanking Amino Acid:
SHHWDYPLKEWRLSARNRGT
Intron Amino Acid Position:
49

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.6
0.72
1
72
39.3
Major BPS
77.9
0.69
1
78.3
31.3
Major PPT
87.7
0.85
0.8
85.7
33.4
Minor 5ss
31
-2.2
3.2
40
45.7
Minor BPS
59.9
0.39
1.6
78.46
39

Associated Gene:

Gene:
SENP7
Ensembl Gene ID:
ENSAPLG00000002660
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002709
88056736 - 88092560
35825