About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_88090096_88092524_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
88090096 - 88092524
Intron Length:
2429

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTAAGTTGT
5'SS Class:
strong_major
3'SS Sequence:
CCTCTATTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATCAT
U12 Branch Point Sequence:
ATGTGTGTAACA
Flanking Amino Acid:
GRTSSSSQVNSRIPKKKPNT
Intron Amino Acid Position:
13

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.5
0.81
1
80.8
34.4
Major BPS
88.2
0.95
0.9
88.3
28.5
Major PPT
83.3
0.75
0.8
80.4
30.4
Minor 5ss
44.3
-0.6
2.9
62.8
41.9
Minor BPS
48
-0.1
2.3
64.88
42.2

Associated Gene:

Gene:
SENP7
Ensembl Gene ID:
ENSAPLG00000002660
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002709
88056736 - 88092560
35825