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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_88099278_88099729_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
88099278 - 88099729
Intron Length:
452

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTATGTCAT
5'SS Class:
major
3'SS Sequence:
TGCTTATCTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTAAT
U12 Branch Point Sequence:
TCTGCCTTTATC
Flanking Amino Acid:
FNGQHMKVDYGSPDHTKFVG
Intron Amino Acid Position:
95

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.3
0.67
1
70.6
41.3
Major BPS
87.2
0.92
0.9
87.6
25.6
Major PPT
76.5
0.6
0.8
74.4
35.5
Minor 5ss
41.5
-0.9
2.8
50
46.3
Minor BPS
61.4
0.34
1.8
70.08
42

Associated Gene:

Gene:
TXNL4B
Ensembl Gene ID:
ENSAPLG00000003001
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003034
88099112 - 88100358
1247