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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_88108126_88110147_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
88108126 - 88110147
Intron Length:
2022

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTAAGTTGT
5'SS Class:
strong_major
3'SS Sequence:
TCATCTCTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
GTAGACTTACTT
Flanking Amino Acid:
SAISIKLAANKPKEPVPTLA
Intron Amino Acid Position:
94

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.5
0.81
1
80.8
34.4
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
83.4
0.75
0.8
81
30.8
Minor 5ss
44.3
-0.6
2.9
62.8
41.9
Minor BPS
48.7
-0
1.9
66.42
44.2

Associated Gene:

Gene:
PCNP
Ensembl Gene ID:
ENSAPLG00000023880
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038986
88104296 - 88111875
7580