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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_88110806_88111745_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
88110806 - 88111745
Intron Length:
940

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGTCAG
5'SS Class:
strong_major
3'SS Sequence:
TTGCTTTTCACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTTAAAT
U12 Branch Point Sequence:
TTGCTTTTCACA
Flanking Amino Acid:
EAKMRMKNIGRDTPTSAGPN
Intron Amino Acid Position:
137

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.7
0.79
1
68.8
43.8
Major BPS
64.6
0.36
1.3
73.3
39.1
Major PPT
83.8
0.76
0.8
79.4
32.6
Minor 5ss
32.2
-2
3.1
40
46.1
Minor BPS
54.8
0.14
1.7
67.7
39.3

Associated Gene:

Gene:
PCNP
Ensembl Gene ID:
ENSAPLG00000023880
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038986
88104296 - 88111875
7580