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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_88128003_88129630_R

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
88128003 - 88129630
Intron Length:
1628

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATTCTAT
5'SS Class:
weak_major
3'SS Sequence:
TTTTCCAATTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTGAA
U12 Branch Point Sequence:
AGTTCATTCACT
Flanking Amino Acid:
KTNPKSAIQQVAMKLVQRGK
Intron Amino Acid Position:
249

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.9
0.54
1.1
69.5
37.4
Major BPS
82.1
0.8
0.8
71.6
36.4
Major PPT
77
0.61
0.9
75.8
33
Minor 5ss
55.9
0.2
2.4
73.2
43.6
Minor BPS
60
0.4
2
80.73
40.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000003432
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003519
88123501 - 88130374
6874