About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_88148480_88149838_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
88148480 - 88149838
Intron Length:
1359

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTCAGTGTT
5'SS Class:
strong_major
3'SS Sequence:
TGTTGATCTGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTTAT
U12 Branch Point Sequence:
TTTCTTTTATTT
Flanking Amino Acid:
MQLSVANNRLVR
Intron Amino Acid Position:
3

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.5
0.79
1.2
85.2
32.2
Major BPS
84.1
0.85
0.9
75.3
39.4
Major PPT
77.5
0.62
0.9
70.5
40.2
Minor 5ss
34
-1.8
3.3
49.7
46.6
Minor BPS
62.9
0.48
1.5
80.46
35.9

Associated Gene:

Gene:
CEP97
Ensembl Gene ID:
ENSAPLG00000004092
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004200
88148474 - 88158857
10384