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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_88149998_88150445_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
88149998 - 88150445
Intron Length:
448

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAGTAC
5'SS Class:
strong_major
3'SS Sequence:
CTTATTTTTGTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
GGTATTGTAACT
Flanking Amino Acid:
WLNLSGNNLKAIEQINSCVS
Intron Amino Acid Position:
56

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.9
0.73
1
72.4
33.3
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
84.7
0.78
0.7
80.7
31.2
Minor 5ss
36.4
-1.5
3.4
49.2
47.3
Minor BPS
49.4
0.03
2
69.59
41.4

Associated Gene:

Gene:
CEP97
Ensembl Gene ID:
ENSAPLG00000004092
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004200
88148474 - 88158857
10384