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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_8815095_8821003_F

Intron Information:

Intron Rank:
128441
Intron Class:
major
Intron Phase:
Intron Coordinates:
8815095 - 8821003
Intron Length:
5909

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTAGTAAC
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTCTTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATTAT
U12 Branch Point Sequence:
CTGTTATTATTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85
0.83
1.1
82.6
29.9
Major BPS
84.7
0.86
1
74.3
40.7
Major PPT
96.3
1.04
0.5
92.6
17.2
Minor 5ss
32.4
-2
2.5
37
40.2
Minor BPS
49.5
0.04
1.9
68
43.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000019168
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045816
8814989 - 8823125
8137