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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_88152350_88153586_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
88152350 - 88153586
Intron Length:
1237

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAACATCA
5'SS Class:
major
3'SS Sequence:
CCCTTCCTAACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CATTAAT
U12 Branch Point Sequence:
TGTACATTAATT
Flanking Amino Acid:
LDGYVISQKESLKAEWLYSQ
Intron Amino Acid Position:
183

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.8
0.66
1.1
71.4
35.1
Major BPS
79.4
0.73
0.9
79.6
29.1
Major PPT
73.7
0.53
0.9
68.8
30.2
Minor 5ss
43.8
-0.7
2.9
57.7
46.5
Minor BPS
68
0.64
1.6
83.2
37.4

Associated Gene:

Gene:
CEP97
Ensembl Gene ID:
ENSAPLG00000004092
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004200
88148474 - 88158857
10384