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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_88153752_88155187_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
88153752 - 88155187
Intron Length:
1436

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGAACT
5'SS Class:
strong_major
3'SS Sequence:
ACTCTGTGTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTAAA
U12 Branch Point Sequence:
TCTGTTGGAACT
Flanking Amino Acid:
AKLEKILSKQRLHQRQLMNQ
Intron Amino Acid Position:
238

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.8
0.92
0.8
83.3
27.9
Major BPS
73.8
0.59
0.9
74
26.8
Major PPT
67.9
0.4
1
65.6
40.4
Minor 5ss
30.7
-2.2
2.9
41.1
44.9
Minor BPS
46
-0.2
2.1
67.31
44.2

Associated Gene:

Gene:
CEP97
Ensembl Gene ID:
ENSAPLG00000004092
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004200
88148474 - 88158857
10384