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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_88155322_88155842_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
88155322 - 88155842
Intron Length:
521

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTAAGACGT
5'SS Class:
strong_major
3'SS Sequence:
TCTACCTATCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTGAA
U12 Branch Point Sequence:
GACTTCTGAATA
Flanking Amino Acid:
AQPPQIVLESERVIQKNCWV
Intron Amino Acid Position:
283

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.7
0.75
1
68.2
42.8
Major BPS
82.1
0.8
0.8
71.6
36.4
Major PPT
70.6
0.46
0.9
62.7
38.6
Minor 5ss
33.8
-1.8
3.2
45.4
43.6
Minor BPS
58
0.25
1.4
61.78
38.4

Associated Gene:

Gene:
CEP97
Ensembl Gene ID:
ENSAPLG00000004092
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004200
88148474 - 88158857
10384