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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_88157428_88158140_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
88157428 - 88158140
Intron Length:
713

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAATAAC
5'SS Class:
strong_major
3'SS Sequence:
TTATACTTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
CATTTTATAACA
Flanking Amino Acid:
EEAVRFLWNQVKSLQQWQLT
Intron Amino Acid Position:
559

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.9
0.89
0.9
83.8
27.2
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
83.1
0.74
0.9
76.8
36.9
Minor 5ss
35.4
-1.7
2.8
44.9
43.2
Minor BPS
59.5
0.29
1.6
68.72
37.7

Associated Gene:

Gene:
CEP97
Ensembl Gene ID:
ENSAPLG00000004092
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004200
88148474 - 88158857
10384