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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_88182052_88183998_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
88182052 - 88183998
Intron Length:
1947

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGTATG
5'SS Class:
strong_major
3'SS Sequence:
TTTTGCATTCAAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAATAAT
U12 Branch Point Sequence:
TTTTTTTGCATT
Flanking Amino Acid:
LTHEESLFFQSDVNIKRPIL
Intron Amino Acid Position:
238

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.4
0.93
0.8
83.5
35.1
Major BPS
80
0.75
1
78.6
31
Major PPT
71.8
0.49
1.1
69.2
40.9
Minor 5ss
45.4
-0.5
2.5
59.2
45.4
Minor BPS
54.5
0.22
1.9
79.72
37

Associated Gene:

Gene:
NXPE3
Ensembl Gene ID:
ENSAPLG00000004114
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004215
88173403 - 88189594
16192