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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_88184073_88187883_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
88184073 - 88187883
Intron Length:
3811

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAGTGA
5'SS Class:
major
3'SS Sequence:
TTTTCTCTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTAAT
U12 Branch Point Sequence:
TGTATGTTAATT
Flanking Amino Acid:
SVIVKPRPFTDSSTMDRAED
Intron Amino Acid Position:
263

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.8
0.7
1
69
38.3
Major BPS
84.4
0.85
1
84
34.5
Major PPT
92.3
0.95
0.6
85.1
29.7
Minor 5ss
35.4
-1.7
3.3
47.1
48.3
Minor BPS
56.4
0.28
2.1
76.87
40

Associated Gene:

Gene:
NXPE3
Ensembl Gene ID:
ENSAPLG00000004114
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004215
88173403 - 88189594
16192