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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_88208581_88208954_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
88208581 - 88208954
Intron Length:
374

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGCGGCCG
5'SS Class:
major
3'SS Sequence:
TTTCGTGTCCCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTTAA
U12 Branch Point Sequence:
TAACCACTAATC
Flanking Amino Acid:
SRGGARPALQAVEQHMGGGK
Intron Amino Acid Position:
79

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.6
0.53
1.1
54.2
44.5
Major BPS
82.2
0.8
0.8
71.9
35.8
Major PPT
76.9
0.61
0.9
68.7
42
Minor 5ss
24.6
-2.9
3.2
30.3
42.9
Minor BPS
48.1
-0.1
1.9
60.65
37.6

Associated Gene:

Gene:
NFKBIZ
Ensembl Gene ID:
ENSAPLG00000004175
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004301
88208284 - 88215092
6809