Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_88212547_88213150_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

88212547 - 88213150

Intron Length:

604

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ATG|GTAAGTAGT

5'SS Class:

strong_major

3'SS Sequence:

TTTTCAAATTAAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTTCAA

U12 Branch Point Sequence:

TATTTTTCAAAT

Flanking Amino Acid:

YVDLEATNYDGLTALHCAVL

Intron Amino Acid Position:

534

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

89.4

0.93

0.8

83.5

Major BPS

90.8

1.01

0.7

91.9

19.6

Major PPT

66.7

0.38

1.1

70.5

38.4

Minor 5ss

37.6

-1.4

2.8

48.3

42.5

Minor BPS

0.42

1.6

78.4

37.6

Associated Gene:

Gene:

NFKBIZ

Ensembl Gene ID:

ENSAPLG00000004175

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000004301

88208284 - 88215092

6809