About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_88213321_88213941_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
88213321 - 88213941
Intron Length:
621

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTGAGTAAA
5'SS Class:
strong_major
3'SS Sequence:
CCTTTCTTGATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AACTAAA
U12 Branch Point Sequence:
CCTTTCTTGATA
Flanking Amino Acid:
IQMGASVEAKDRKSGRSALH
Intron Amino Acid Position:
591

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.4
0.79
0.9
82.1
24.6
Major BPS
68.7
0.47
0.9
67.9
25
Major PPT
74.6
0.55
0.9
72
32.7
Minor 5ss
31.3
-2.1
2.7
33.5
35.5
Minor BPS
67.4
0.54
1.2
68.91
38.3

Associated Gene:

Gene:
NFKBIZ
Ensembl Gene ID:
ENSAPLG00000004175
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004301
88208284 - 88215092
6809