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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_88214053_88214166_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
88214053 - 88214166
Intron Length:
114

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGGTGA
5'SS Class:
strong_major
3'SS Sequence:
TTGTCTTCTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTCAT
U12 Branch Point Sequence:
CATTTCTTCATG
Flanking Amino Acid:
PNCLSFVNAKAYNGNTALHV
Intron Amino Acid Position:
628

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.1
0.73
1
68.4
39.1
Major BPS
87.4
0.93
0.9
87.9
29.5
Major PPT
85
0.79
0.8
77.5
36.9
Minor 5ss
42.2
-0.9
3.1
55.7
48.5
Minor BPS
54.1
-0
1.8
59.43
43.1

Associated Gene:

Gene:
NFKBIZ
Ensembl Gene ID:
ENSAPLG00000004175
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004301
88208284 - 88215092
6809