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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_88214335_88215038_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
88214335 - 88215038
Intron Length:
704

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAACAAA
5'SS Class:
strong_major
3'SS Sequence:
TTCTCTCCTCTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGCTAAT
U12 Branch Point Sequence:
TAAATGCTAATG
Flanking Amino Acid:
LVPDGLVGEQIRRILKGKAI
Intron Amino Acid Position:
684

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.7
0.75
1
76.5
34.2
Major BPS
79.3
0.73
1.1
77.9
34.9
Major PPT
81.1
0.7
0.7
74.1
31.1
Minor 5ss
38
-1.3
3
48.1
47.6
Minor BPS
41.2
-0.8
2.2
46.52
40.2

Associated Gene:

Gene:
NFKBIZ
Ensembl Gene ID:
ENSAPLG00000004175
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004301
88208284 - 88215092
6809