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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_88365528_88370473_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
88365528 - 88370473
Intron Length:
4946

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGTGTT
5'SS Class:
strong_major
3'SS Sequence:
TATTTTTGTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTTAT
U12 Branch Point Sequence:
ATCTTCTTATTT
Flanking Amino Acid:
CDANLHSRFPAERDINVFCG
Intron Amino Acid Position:
36

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.6
0.96
0.8
87
27.7
Major BPS
91.4
1.03
0.7
79.9
34.9
Major PPT
84.5
0.78
0.9
80.9
36.4
Minor 5ss
38.8
-1.3
3.4
55
43.6
Minor BPS
64.4
0.53
1.6
77.4
39.8

Associated Gene:

Gene:
ZPLD1
Ensembl Gene ID:
ENSAPLG00000004513
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004638
88365422 - 88385064
19643