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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_88370695_88373358_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
88370695 - 88373358
Intron Length:
2664

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTAAGATGA
5'SS Class:
strong_major
3'SS Sequence:
TCTCCCTCAATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGGTAAT
U12 Branch Point Sequence:
TCTCCCTCAATA
Flanking Amino Acid:
TLESCGNTLVVSSARGINAY
Intron Amino Acid Position:
110

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.8
0.77
0.9
70.5
36.3
Major BPS
69.2
0.48
1.3
69.7
44.2
Major PPT
70.2
0.46
0.8
66.3
28.4
Minor 5ss
37.4
-1.4
3
44.6
45.1
Minor BPS
66
0.5
1.5
73.19
38.8

Associated Gene:

Gene:
ZPLD1
Ensembl Gene ID:
ENSAPLG00000004513
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004638
88365422 - 88385064
19643