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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_88373541_88374206_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
88373541 - 88374206
Intron Length:
666

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTC|GTAAGTGTG
5'SS Class:
major
3'SS Sequence:
GGTTCTGTTGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTGAT
U12 Branch Point Sequence:
TATTCTTTGATC
Flanking Amino Acid:
EYLVNNTQLASSSAAISVRE
Intron Amino Acid Position:
170

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.3
0.5
1.3
68.8
42.2
Major BPS
84
0.85
0.9
75
39.9
Major PPT
71.8
0.49
1
65.7
40.9
Minor 5ss
37.8
-1.4
3.3
49.8
41.1
Minor BPS
75.2
0.78
1
78.14
31.3

Associated Gene:

Gene:
ZPLD1
Ensembl Gene ID:
ENSAPLG00000004513
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004638
88365422 - 88385064
19643